Monitoring the Success of Hydroseeding Application Using Microbial Diversity in Some Post-Coal Mining Revegetation Areas, South Kalimantan
Monitoring the Success of Hydroseeding Application Using Microbial Diversity
DOI:
https://doi.org/10.11594/jtls.14.03.06Keywords:
Microbe diversity, NGS, Post-coal mining, Revegetation, SoilAbstract
Successful revegetation improves the whole ecosystem's integrity, including microbe habitat. The goal of this study is to monitor the success of hydroseeding applications in some post-coal mining revegetation areas using microbial diversity. This study was conducted by sampling soils at a reference site (HS) and three revegetation areas (Kuni, AR07, AH). Kuni represents a 12-year-old monoculture replantation area while AR07 and AH are representations of hydroseeded areas with different ages, 5.5 years and 3 months old. Soil samples were then analyzed to determine N, P, K, and CEC, and extracted using the CTAB/SDS method, resulting in the total genome DNA. The genes of 16S rRNA were amplified using a specific primer, followed by product quantification and purification. Sequencing libraries were generated using the NEBNext® UltraTM DNA Library Pre Kit for Illumina. The library was sequenced on Illumina platform, and 250 bp paired-end reads were generated. The data were then analyzed using Anova, biplot, and cluster analysis. Results showed that AR07 was the most similar site to HS based on soil chemical properties and had the highest value of all alpha diversity indices. The dominant presence of Burkholderiales in AH indicated improvement in soil chemical properties. The soil microbial diversity PCA analysis revealed that the similarity between HS and AH was high. It was indicating a better success of hydroseeding at AH with shorter revegetation time as compared to the monoculture replantation site in Kuni. Hydroseeding using local pioneer species is highly recommended for postcoal mining revegetation.
References
Benalcazar P, Krawczyk M, Kaminski J (2017) Forecasting global coal consumption: an artificial neural network approach. Gospodarka Surowcami Mineralnymi 33 (4): 29 - 44. doi: 10.1515/gospo-2017-0042.
Li F, Li X, Hou L, Shao A (2018) Impact of coal mining on the spatial distribution of potentially toxic metals in farmland tillage soil. Scientific Reports 8: 14925. doi: 10.1038/s41598-018-33132-4.
Setiawan AA, Budianta D, Suheryanto, Priadi DP (2018) Review: pollution due to coal mining activity and its impact on the environment. Sriwijaya Journal of Environment 3 (1): 1 - 5. doi: 10.22135/sje.2018.3.1.1-5.
Afkarina KII, Wardana S, Damayanti P (2019) Coal mining sector contribution to environmental conditions and human development index in East Kalimantan Province. Journal of Environmental Science and Sustainable De-velopment 2 (2): 192 – 207. doi: 10.7454/jessd.v2i2.1025.
Kumar R, Sharma S, Tara K, Sundararajan M (2019) Environmental issues of coal mines and its allied indus-tries: suggestive measures for root level remedies. International Conference and Exhibition on Energy & Envi-ronment: Challenges & Opportunities 332-339.
Iskandar I, Suryaningtyas DT, Baskoro DPT, et al. (2019) Revegetation as a driver of chemical and physical soil property changes in a post-mining landscape of East Kalimantan: a chronosequence study. Catena 215: 106355. doi: 10.1016/j.catena.2022.106355.
Lestari KG, Budi SW, Suryaningtyas DT (2022) The impact of revegetation activities in various post-mining lands in Indonesia (study of literature). IOP Conference Series: Earth and Environmental Science 959: 012038. doi: 10.1088/1755-1315/959/1/012038.
Roy R, Sultana S, Wang J, et al. (2022) Revegetation of coal mine degraded arid areas: the role of a native woody species under optimum water and nutrient resources. Environmental Research 204: 111921. doi: 10.1016/j.envres.2021.111921.
Hartati W, Sudarmadji T (2022) The dynamics of soil carbon in revegetated postcoal mining sites: a case study in Berau, East Kalimantan, Indonesia. Biodiversitas 23 (10): 4984 - 4991. doi: 10.13057/biodiv/d231004.
Nyirenda H (2020) Soil carbon status after vegetation restoration in South West Iceland. Heliyon 6 (10): e05254. doi: 10.1016/j.heliyon.2020.e05254.
Azhar B, Puan CL, Zakaria M, Hassan N, Arif M (2014) Effects of monoculture and polyculture practices in oil palm smallholdings on tropical farmland birds. Basic and Applied Ecology 15 (4):
- 346. doi: 10.1016/j.baae.2014.06.001.
Anshari MF, Fernandes AAR, Arisoesilaningsih E (2018) Comparing seed germination of some local plant spe-cies on two hydroseeding mulches for post mining revegetation. Journal of Degraded and Mining Lands Man-agement 5 (2): 1103 - 1110. doi: 10.15243/jdmlm.2018.052.1103.
Anshari MF, Boedianto E, Fernandes AAR, Arisoesilaningsih E (2018) Hydroseeding application using pioneer local plant seeds for coal postmining soil in Tanah Laut Regency, South Kalimantan. Journal of Degraded and Mining Lands Management 5 (4): 1335 - 1345.
doi: 10.15243/jdmlm.2018.054.1335.
Anshari MF, Fernandes AAR, Leksono AS, Arisoesilaningsih E (2023) Screening potential local seeds species for hydroseeding of postcoal mining land multilayering revegetation. Journal of Degraded and Mining Lands Man-agement 11 (1): 4969 – 4977. doi: 10.15243/jdmlm.2023.111.4969.
Oña JD, Ferrer A, Osorio F (2011) Erosion and vegetation cover in road slopes hydroseeded with sewage sludge. Transportation Research Part D 16: 465 - 468. doi: 10.1016/j.trd.2011.04.002.
Parsakhoo A, Jajouzadeh M, Motlagh AR (2018) Effect of hydroseeding on grass yield and water use efficiency on forest road artificial soil slopes. Journal of Forest Science 64 (4): 157 - 163.
doi: 10.17221/2/2018-JFS.
Emeka OJ, Nahazanan H, Kalantar B, Khuzaimah Z, Sani OS (2021) Evaluation of the effect of hydroseeded veg-etation for slope reinforcement. Land 10 (10): 995. doi: 10.3390/land10100995.
Chang Y, Chen F, Zhu Y, et al. (2022) Influence of revegetation on soil microbial community and its assembly process in the open-pit mining area of the Loess Plateau, China. Frontiers in Microbiology 13: 992816. doi: 10.3389/fmicb.2022.992816.
da Silva GOA, Southam G, Gagen EJ (2023) Accelerating soil aggregate formation: a review on microbial processes as the critical step in a post-mining rehabilitation context. Soil Research 61 (3): 209-223. doi: 10.1071/SR22092.
Mao Z, Harris J, Zhang Z (2024) Responses of natural microorganisms to land reclamation and applications of functional microorganisms in biorestoration of coal mining area. Diversity 16 (2): 86. doi: 10.3390/d16020086.
Li Y, Wen H, Chen L, Yin T (2014) Succession of bacterial community structure and diversity in soil along a chronosequence of reclamation and revegetation on coal mine spoils in China. PLoS ONE 9 (12): e115024. doi: 10.1371/journal.pone.0115024.
Guo Y, Chen X, Wu Y, et al. (2018) Natural revegetation of a semiarid habitat alters taxonomic and functional diversity of soil microbial communities. Science of The Total Environment 635: 598 - 606. doi: 10.1016/j.scitotenv.2018.04.171.
Sun S, Sun H, Zhang D, et al. (2019) Response of soil microbes to vegetation restoration in coal mining subsid-ence areas at Huabei coal mine, China. International Journal of Environmental Research and Public Health 16 (10): 1757. doi: 10.3390/ijerph16101757.
Trimanto, Sofiah S (2018) Exploration of flora diversity and recommending species for reclamation of coal min-ing with biodiversity concept in Besiq Bermai Forest, East Borneo. Journal of Tropical Life Science 8 (2): 97 - 107. doi: 10.11594/jtls.08.02.02.
Verma SK, Sharma PC (2020) NGS-based characterization of microbial diversity and functional profiling of solid tannery waste metagenomes. Genomics 112: 2903 - 2913. doi: 10.1016/j.ygeno.2020.04.002.
Yusuf M, Fernandes AAR, Kurniawan S, Arisoesilaningsih E (2021) Spatial variation of soil bacteria communities and its alpha diversity as a potential bioindicator of land degradation. Journal of Degraded and Mining Lands Management 8 (4): 2847 - 2860, doi: 10.15243/jdmlm.2021.084.2847.
Bremner JM (1960) Determination of nitrogen in soil by the Kjeldahl method. The Journal of Agricultural Sci-ence 55 (1): 11 - 33. doi: 10.1017/S0021859600021572.
Barus J, Murni AM (2010) Recommendation of phosphate and potassium fertilizers for maize at five locations in Lampung. Journal of Tropical Soils 15 (2): 127 - 132. doi: 10.5400/jts.2010.15.2.127.
Ure AM, Quevauviller P, Muntau H, Griepink B (1993) Speciation of heavy metals in soils and sediments. An account of the improvement and harmonization of extraction techniques undertaken under the auspices of the BCR of the Commission of the European Communities. International Journal of Environmental Analytical Chem-istry 51 (1 - 4): 135 - 151. doi: 10.1080/03067319308027619.
Lengur ERA, Jatmiko YD, Arisoesilaningsih E, Widodo E (2023) Next-generation sequencing of the microbial community profile in free-range chicken (Gallus gallus domesticus) cecum from East Nusa Tenggara Province. Journal of Tropical Life Science 13 (2): 349 - 358. doi: 10.11594/jtls.13.02.13.
Magoč T, Salzberg SL (2011) FLASH: fast length adjustment of short reads to improve genome assemblies. Bioin-formatics 27 (21): 2957 - 2963. doi: 10.1093/bioinformatics/btr507.
Caporaso JG, Kuczynski J, Stombaugh J, et al. (2010) QIIME allows analysis of high-throughput community se-quencing data. Nature Methods 7: 335 - 336. doi: 10.1038/nmeth.f.303.
Bokulich NA, Subramanian S, Faith JJ, et al. (2013) Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing. Nature Methods 10: 57 - 59. doi: 10.1038/nmeth.2276.
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R (2011) UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 27 (16): 2194 - 2200. doi: 10.1093/bioinformatics/btr381.
Edgar RC (2013) UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods 10: 996 - 998. doi: 10.1038/nmeth.2604.
DeSantis TZ, Hugenholtz P, Larsen N, et al. (2006) Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Applied and Environmental Microbiology 72 (7): 5069 - 5072.
doi: 10.1128/AEM.03006-05.
Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Applied and Environmental Microbiology 73 (16): 5261 - 5267. doi: 10.1128/AEM.00062-07.
Landon JR, ed. (1991) Booker Tropical Soil Manual: A Handbook for Soil Survey and Agricultural Land Evalua-tion in The Tropics and Sub Tropics. 1st Edition. UK, Longman Scientific and Technical Publishers Harlow.
Sardar MF, Younas F, Farooqi ZUR, Li Y (2023) Soil nitrogen dynamics in natural forest ecosystem: a review. Frontiers in Forests and Global Change 6: 1144930. doi: 10.3389/ffgc.2023.1144930.
Rennenberg H, Dannenmann M, Gessler A, et al. (2009) Nitrogen balance in forest soils: nutritional limitation of plants under climate change stresses. Plant Biology 11: 4 - 23. doi: 10.1111/j.1438-8677.2009.00241.x.
Soil Research Institute, ed. (2005) Technical Instructions: Analysis of Soil Chemistry, Plant, Water, and Fertiliz-er. Bogor, Ministry of Agriculture.
Sparks DL (2000) Bioavailability of potassium. In: Summer ME, ed. Handbook of Soil Science. Boca Raton, CRC Press.
Haryati U, Irawan, Maswar (2021) Application of mulch and soil ameliorant for increasing soil productivity and its financial analysis on shallots farming in the upland. IOP Conference Series: Earth and Environmental Science 648: 012155. doi: 10.1088/1755-1315/648/1/012155.
Zhang W, Han J, Wu H, et al. (2021) Diversity patterns and drivers of soil microbial communities in urban and suburban park soils of Shanghai, China. PeerJ 9: e11231. doi: 10.7717/peerj.11231.
Chiesa SD, Genova G, Cecilia D, Niedrist G (2019) Phytoavailable phosphorus (P2O5) and potassium (K2O) in topsoil for apple orchards and vineyards, South Tyrol, Italy. Journal of Maps 15 (2): 555 - 562. doi: 10.1080/17445647.2019.1633962.
Silva GA, Grangeiro LC, Sousa VFL, et al. (2019) Agronomic performance of beet cultivars as a function of phophorus fertilization. Agrimbia 23 (7): 518 - 523.
doi: 10.1590/1807-1929/agriambi.v23n7p518-523.
Xu X, Du X, Wang F, et al. (2020) Effects of potassium levels on plant growth, accumulation and distribution of carbon, and nitrate metabolism in apple dwarf rootstock seedlings. Frontiers in Plant Science 11: 904. doi: 10.3389/fpls.2020.00904.
Liu H, Li S, Qiang R, et al. (2022) Response of soil microbial community structure to phosphate fertilizer reduc-tion and combinations of microbial fertilizer. Frontiers in Environmental Science 10: 899727. doi: 10.3389/fenvs.2022.899727.
Furey GN, Tilman D (2021) Plant biodiversity and the regeneration of soil fertility. PNAS 118 (49): e2111321118. doi: 10.1073/pnas.2111321118.
Fang K, Kou D, Wang G, et al. (2017) Decreased soil cation exchange capacity across Northern China’s grass-lands over the last three decades. Journal of Geophysical Research: Biogeosciences 122 (11): 3088 - 3097. doi: 10.1002/2017JG003968.
Purnamasari L, Rostaman T, Widowati LR, Anggria L (2021) Comparison of appropriate cation exchange capaci-ty (CEC) extraction methods for soil from several regions of Indonesia. IOP Conference Series: Earth and Envi-ronmental Science 648: 012209. doi: 10.1088/1755-1315/648/1/012209.
Mutammimah U, Minardi S, Suntoro (2020) Organic amendments effect on the soil chemical properties of mar-ginal land and soybean yield. Journal of Degraded and Mining Lands Management 7 (4): 2263 - 2268. doi: 10.15243/jdmlm.2020.074.2263.
Thomas C, Sexstone A, Skousen J (2015) Soil biochemical properties in brown and gray mine soils with and without hydroseeding. SOIL 1: 621 - 629. doi: 10.5194/soil-1-621-2015.
Dunifon SN, Evanylo GK, Maguire RO, Goatley JM (2011) Soil nutrient and fescue (Festuca spp.) responses to compost and hydroseed on a disturbed roadside. Compost Science & Utilization 10 (3): 147 - 151. doi: 10.1080/1065657X.2011.10736993.
Xiao H, Li Z, Dong Y, et al. (2017) Changes in microbial communities and respiration following the revegetation of eroded soil. Agriculture, Ecosystems and Environment 246: 30 - 37. doi: 10.1016/j.agee.2017.05.026.
Zeng Q, Lebreton A, Man X, et al. (2022) Ecological drivers of the soil microbial diversity and composition in primary old-growth forest and secondary woodland in a subtropical evergreen broad-leaved forest biome in the Ailao Mountains, China. Frontiers in Microbiology 13: 908257. doi: 10.3389/fmicb.2022.908257.
Mhete M, Eze PN, Rahube TO, Akinyemi FO (2020) Soil properties influence bacterial abundance and diversity under different land-use regimes in semi-arid environments. Scientific African 7: e00246. doi: 10.1016/j.sciaf.2019.e00246.
Zhang H, Ullah F, Ahmad R, et al. (2022) Response of soil proteobacteria to biochar amendment in sustainable agriculture- a mini review. Journal of Soil, Plant and Environment 1 (2): 16 - 30. doi: 10.56946/jspae.v1i2.56.
Erlarcher A, Cernava T, Cardinale M, et al. (2015) Rhizobiales as functional and endosymbiontic members in the lichen symbiosis of Lobaria pulmonaria L. Frontiers in Microbiology 6: 53. doi: 10.3389/fmicb.2015.00053.
Garrido-Oter R, Nakano RT, Dombrowski N, Ma K, Team TA, McHardy AC, Schulze-Lefert P (2018) Modular traits of the rhizobiales root microbiota and their evolutionary relationship with symbiotic rhizobia. Cell Host Mi-crobe 24 (1): 155 - 167. doi: 10.1016/j.chom.2018.06.006.
Tatsumi C, Taniguchi T, Yamanaka N, et al. (2021) Micro-catchment water harvesting-based rehabilitation ame-liorated soil microbial abundance, diversity and function in a degraded dryland. Applied Soil Ecology 164: 103938. doi: 10.1016/j.apsoil.2021.103938.
Ming-hui C, Yan D, Ming-hao L, et al. (2023) Manure substitution improves maize yield by promoting soil fertili-ty and mediating the microbial community in lime concretion black soil. Journal of Integrative Agriculture. doi: 10.1016/j.jia.2023.05.040.
Ormeno-Orrillo E, Martinez-Romero E (2019) A genomotaxonomy view of the Bradyrhizobium genus. Frontiers in Microbiology 10: 1334. doi: 10.3389/fmicb.2019.01334.
Gyaneshwar P, James EK, Reddy PM, Ladha JK (2002) Herbaspirillum colonization increases growth and nitro-gen accumulation in aluminium-tolerant rice varieties. The New Phytologist 154 (1): 131 - 145. doi: 10.1046/j.1469-8137.2002.00371.x
Hayat R, Ali S, Amara U, Khalid R, Ahmed I (2010) Soil beneficial bacteria and their role in plant growth promo-tion: a review. Annals of Microbiology 60: 579 - 598. doi: 10.1007/s13213-010-0117-1.
Alves LPS, do Amaral FP, Kim D, et al. (2019) Importance of poly-3-hydroxybutyrate metabolism to the ability of Herbaspirillum seropedicae to promote plant growth. Applied and Environmental Microbiology 85 (6): e02586-18. doi: 10.1128/AEM.02586-18.
Johan PD, Ahmed OH, Omar L, Hasbullah NA (2021) Phosphorus transformation in soils following co-application of charcoal and wood ash. Agronomy 11 (10). doi: 10.3390/agronomy11102010.
Wiryawan A, Eginarta WS, Hermanto FE, Ustiatik R, Dinira L, Mustafa I (2022) Changes in essential soil nutri-ents and soil disturbance directly affected soil microbial community structure: a metagenomic approach. Journal of Ecological Engineering 23 (7): 238 - 245. doi: 10.12911/22998993/149972.
Rodrigues YF, Andreote FD, Silva AMM, Dias ACF, Taketani RG, Cotta SR (2023) Disentangling the role of soil bacterial diversity in phosphorus transformation in the maize rhizosphere. Applied Soil Ecology 182: 104739. doi: 10.1016/j.apsoil.2022.104739.
Downloads
Published
Issue
Section
License
Copyright (c) 2024 Journal of Tropical Life Science
This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.
The work has not been published before (except in the form of an abstract or part of a published lecture or thesis) and it is not under consideration for publication elsewhere. When the manuscript is accepted for publication in this journal, the authors agree to automatic transfer of the copyright to the publisher.
Journal of Tropical Life Science is licensed under Creative Commons Attribution-NonCommercial 4.0 International License
